Difference between revisions of "TAME"

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m (1. The Core Problem: Where is the Blueprint?)
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== Addendum: The “blueprint” problem (and why DNA alone is not enough) ==
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== The “blueprint” problem (and why DNA alone is not enough) ==
 
A useful way to sharpen the morphogenesis question is to separate '''molecular ingredients''' from '''organizational information'''. Standard biology often talks as if the genome “codes for” anatomy, but the genome primarily encodes '''protein sequences''' and regulatory elements—not an explicit file that says “five fingers,” “two eyes,” or “bilateral symmetry.”
 
A useful way to sharpen the morphogenesis question is to separate '''molecular ingredients''' from '''organizational information'''. Standard biology often talks as if the genome “codes for” anatomy, but the genome primarily encodes '''protein sequences''' and regulatory elements—not an explicit file that says “five fingers,” “two eyes,” or “bilateral symmetry.”
  
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* '''Not fragile''': Development and regeneration can be surprisingly robust—tissues can compensate, reroute, and still converge on a correct form.
 
* '''Not fragile''': Development and regeneration can be surprisingly robust—tissues can compensate, reroute, and still converge on a correct form.
  
== Addendum: The bioelectric code (mechanism-level details) ==
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== The bioelectric code (mechanism-level details) ==
 
Many (non-neural) cells maintain a steady resting membrane voltage, often written as <math>V_{mem}</math>. In the bioelectric view, these stable voltages are not “background noise”—they can function as '''state variables''' that influence gene expression, cell behavior, and tissue-level patterning. [[Michael Levin]] refers to this as a kind of '''bioelectric code'''—a computational layer that sits between genes and anatomy. <ref>Levin M. “The bioelectric code: An ancient computational medium for dynamic control of growth and form.” (2017) ''Biosystems''. https://pmc.ncbi.nlm.nih.gov/articles/PMC10464596/</ref>
 
Many (non-neural) cells maintain a steady resting membrane voltage, often written as <math>V_{mem}</math>. In the bioelectric view, these stable voltages are not “background noise”—they can function as '''state variables''' that influence gene expression, cell behavior, and tissue-level patterning. [[Michael Levin]] refers to this as a kind of '''bioelectric code'''—a computational layer that sits between genes and anatomy. <ref>Levin M. “The bioelectric code: An ancient computational medium for dynamic control of growth and form.” (2017) ''Biosystems''. https://pmc.ncbi.nlm.nih.gov/articles/PMC10464596/</ref>
  
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* Changing the tissue’s bioelectric state can change outcomes without changing the DNA.
 
* Changing the tissue’s bioelectric state can change outcomes without changing the DNA.
  
== Addendum: Measuring and visualizing bioelectric patterns ==
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== Measuring and visualizing bioelectric patterns ==
 
Bioelectric states are measurable, and multiple complementary tools are commonly used:
 
Bioelectric states are measurable, and multiple complementary tools are commonly used:
 
* '''Voltage-sensitive dyes''' to visualize tissue-level voltage domains during development.
 
* '''Voltage-sensitive dyes''' to visualize tissue-level voltage domains during development.
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This measurement toolbox is important because it keeps the concept of “bioelectric pattern memory” anchored to observable, falsifiable signals.
 
This measurement toolbox is important because it keeps the concept of “bioelectric pattern memory” anchored to observable, falsifiable signals.
  
== Addendum: Voltage domains, boundaries, and “prepatterns” ==
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== Voltage domains, boundaries, and “prepatterns” ==
 
In developing tissues, bioelectric patterns can form '''voltage domains'''—regions with distinct electrical states. These domains can behave like “territories,” and the boundaries between domains can function like '''anatomical borders''' that help guide where structures form.
 
In developing tissues, bioelectric patterns can form '''voltage domains'''—regions with distinct electrical states. These domains can behave like “territories,” and the boundaries between domains can function like '''anatomical borders''' that help guide where structures form.
  
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This perspective reinforces the idea that anatomy is not only assembled from parts, but also '''steered by large-scale informational constraints'''.
 
This perspective reinforces the idea that anatomy is not only assembled from parts, but also '''steered by large-scale informational constraints'''.
  
== Addendum: Target morphology as an attractor (and why growth stops) ==
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== Target morphology as an attractor (and why growth stops) ==
 
The concept of '''target morphology''' can be usefully described in dynamical-systems language as an '''attractor state''':
 
The concept of '''target morphology''' can be usefully described in dynamical-systems language as an '''attractor state''':
 
* Many small perturbations still “roll downhill” into the same final form.
 
* Many small perturbations still “roll downhill” into the same final form.
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* <ref>Beane W.S. et al. “Bioelectric signaling regulates head and organ size during planarian regeneration.” (2013) ''Development''. https://pubmed.ncbi.nlm.nih.gov/23250205/</ref>
 
* <ref>Beane W.S. et al. “Bioelectric signaling regulates head and organ size during planarian regeneration.” (2013) ''Development''. https://pubmed.ncbi.nlm.nih.gov/23250205/</ref>
  
== Addendum: “Agential materials” (a simple, non-mystical spectrum) ==
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== “Agential materials” (a simple, non-mystical spectrum) ==
 
TAME often motivates clearer scientific questions by treating tissues as '''agents''' (in a precise, non-mystical sense). One simple spectrum is:
 
TAME often motivates clearer scientific questions by treating tissues as '''agents''' (in a precise, non-mystical sense). One simple spectrum is:
  
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* What strategies (policies) does the system use under constraints?
 
* What strategies (policies) does the system use under constraints?
  
== Addendum: Example — “Picasso tadpoles” and anatomical competence ==
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== Example — “Picasso tadpoles” and anatomical competence ==
 
A well-known example used by [[Michael Levin]] involves “'''Picasso tadpoles''',” in which craniofacial features begin in abnormal positions. During development and metamorphosis, these animals can still end up with largely normal frog faces, because the organs move along novel paths and stop when they reach correct anatomical relationships. <ref>Levin M. “Technological Approach to Mind Everywhere.” (2022) https://pmc.ncbi.nlm.nih.gov/articles/PMC8988303/</ref>
 
A well-known example used by [[Michael Levin]] involves “'''Picasso tadpoles''',” in which craniofacial features begin in abnormal positions. During development and metamorphosis, these animals can still end up with largely normal frog faces, because the organs move along novel paths and stop when they reach correct anatomical relationships. <ref>Levin M. “Technological Approach to Mind Everywhere.” (2022) https://pmc.ncbi.nlm.nih.gov/articles/PMC8988303/</ref>
  
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Note: Popular retellings sometimes blur details; the durable scientific point is the demonstration of '''developmental plasticity''' and the usefulness of describing it as problem-solving toward a stable anatomical goal.
 
Note: Popular retellings sometimes blur details; the durable scientific point is the demonstration of '''developmental plasticity''' and the usefulness of describing it as problem-solving toward a stable anatomical goal.
  
== Addendum: The “Cognitive Light Cone” (boundaries of self and collective goals) ==
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== The “Cognitive Light Cone” (boundaries of self and collective goals) ==
 
Levin uses the metaphor of a '''cognitive light cone''' to describe the spatial and temporal scope of a system’s goals—what it can “care about” and regulate over space and time. <ref>Levin M. “The Computational Boundary of a ‘Self’: Developmental Bioelectricity Drives Multicellularity and Scale-Free Cognition.” (2019) https://pmc.ncbi.nlm.nih.gov/articles/PMC6923654/</ref>
 
Levin uses the metaphor of a '''cognitive light cone''' to describe the spatial and temporal scope of a system’s goals—what it can “care about” and regulate over space and time. <ref>Levin M. “The Computational Boundary of a ‘Self’: Developmental Bioelectricity Drives Multicellularity and Scale-Free Cognition.” (2019) https://pmc.ncbi.nlm.nih.gov/articles/PMC6923654/</ref>
  
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* This complements (not replaces) genetic and immune perspectives, and motivates research into restoring normal constraint signals as one potential therapeutic angle.
 
* This complements (not replaces) genetic and immune perspectives, and motivates research into restoring normal constraint signals as one potential therapeutic angle.
  
== Addendum: Xenobots and programmable living collectives ==
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== Xenobots and programmable living collectives ==
 
'''Xenobots''' are small living constructs made from [[Xenopus]] (frog) cells, developed by teams including [[Michael Levin]] and [[Josh Bongard]]. They are notable because they demonstrate that cellular collectives can form '''novel, stable bodies''' and behaviors when placed under new constraints. <ref>Kriegman S., Blackiston D., Levin M., Bongard J. “Kinematic self-replication in reconfigurable organisms.” (2021) ''PNAS'' 118(49):e2112672118. https://krorgs.github.io/</ref>
 
'''Xenobots''' are small living constructs made from [[Xenopus]] (frog) cells, developed by teams including [[Michael Levin]] and [[Josh Bongard]]. They are notable because they demonstrate that cellular collectives can form '''novel, stable bodies''' and behaviors when placed under new constraints. <ref>Kriegman S., Blackiston D., Levin M., Bongard J. “Kinematic self-replication in reconfigurable organisms.” (2021) ''PNAS'' 118(49):e2112672118. https://krorgs.github.io/</ref>
  
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* The main scientific takeaway is “programmable living matter” and the importance of careful goals and safety constraints.
 
* The main scientific takeaway is “programmable living matter” and the importance of careful goals and safety constraints.
  
== Addendum: Practical implications (beyond philosophy) ==
+
== Practical implications (beyond philosophy) ==
 
These ideas are not only conceptual; they suggest actionable directions:
 
These ideas are not only conceptual; they suggest actionable directions:
 
* '''Regenerative medicine as setpoint repair''': restoring or editing pattern memory (target morphology), not only adding cells.
 
* '''Regenerative medicine as setpoint repair''': restoring or editing pattern memory (target morphology), not only adding cells.
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* '''Living materials and bioengineering''': programming tissue goals and letting self-construction do the hard work, rather than “machining” anatomy.
 
* '''Living materials and bioengineering''': programming tissue goals and letting self-construction do the hard work, rather than “machining” anatomy.
  
== Addendum: Common misunderstandings (quick clarifiers) ==
+
== Common misunderstandings (quick clarifiers) ==
 
* “Cells are intelligent” does '''not''' mean “cells are conscious like humans.” It means they can store information, pursue goals, and adapt strategies.
 
* “Cells are intelligent” does '''not''' mean “cells are conscious like humans.” It means they can store information, pursue goals, and adapt strategies.
 
* “Bioelectric fields” does '''not''' mean mystical energy. It refers to measurable voltage patterns and ion flows across membranes and tissues.
 
* “Bioelectric fields” does '''not''' mean mystical energy. It refers to measurable voltage patterns and ion flows across membranes and tissues.
 
* “Not the genome” does '''not''' mean “genes don’t matter.” It means genes are necessary but not sufficient to specify high-level geometry by themselves.
 
* “Not the genome” does '''not''' mean “genes don’t matter.” It means genes are necessary but not sufficient to specify high-level geometry by themselves.
  
 
 
 
 
 
== 1. The Core Problem: Where is the Blueprint? ==
 
Standard biology assumes that the genome "codes for" the anatomy. However, the genome only codes for protein sequences. It does not contain a file that specifies "five fingers," "two eyes," or "symmetry."
 
* '''The Paradox:''' If you blend a salamander into a soup of enzymes, you have all the genetic information, but you have lost the organism.
 
* '''[[Creatives#Michael Levin |Levin's]] Solution:''' The "blueprint" is not a static instruction set in the nucleus but a dynamic, verifiable state stored in the electrical communications ''between'' cells.
 
 
In this framing, the “blueprint” is closer to an internal, distributed ''model'' or ''representation'' of a desired anatomical outcome:
 
* '''Not a picture:''' It’s not an image of the final body; it’s a set of constraints and goal-states that can be reached by many different routes.
 
* '''Not purely chemical gradients:''' Classic morphogen gradients help, but [[Creatives#Michael Levin |Levin]] emphasizes stable electrical states and [[Network Pattern|network]] connectivity that can store information over time.
 
* '''Not fragile:''' The blueprint is robust to disturbance—cells can compensate, reroute, and still converge on the correct form.
 
 
== 2. Bioelectricity: The Software of Life ==
 
Just as the brain uses electrical signals (action potentials) to process information, [[Creatives#Michael Levin |Levin]] has demonstrated that ''all'' cells in the body (somatic cells) communicate electrically.
 
 
=== The Bioelectric Code ===
 
Cells possess ion channels and pumps in their membranes that create a voltage gradient ($V_{mem}$).
 
* '''Gap Junctions:''' Cells connect to their neighbors via protein tunnels called gap junctions, allowing ions and small signaling molecules to pass freely.
 
* '''Tissue-Level [[Network Pattern|networks]]:''' These connections allow tissues to form bioelectric [[Network Pattern|networks]] that function like a primitive brain, storing patterns and making decisions about growth and form.
 
* '''Reprogramming:''' [[Creatives#Michael Levin |Levin]] has shown that by altering these voltage gradients (using optogenetics or ion channel drugs), you can rewrite the "pattern memory" of the tissue without touching the DNA.
 
 
''What “bioelectricity” is:''
 
* '''Resting potentials are information:''' Most cells maintain stable voltage differences at rest (not just neurons firing spikes). Those steady voltages can encode “state.”
 
* '''Ion channels are dial knobs:''' A change in which channels are open alters voltage, which changes what genes get turned on/off, which changes cell behavior.
 
* '''[[Network Pattern|networks]] matter:''' The key is not a single cell’s voltage but the pattern across a tissue and how cells are coupled.
 
 
'''Measuring and Visualizing Bioelectric Patterns'''
 
* '''Voltage-sensitive dyes''' can visualize tissue-level voltage domains during development.
 
* '''Electrophysiology''' (microelectrodes) can directly measure membrane potentials.
 
* '''Genetically encoded voltage indicators (GEVIs)''' can report voltage changes in living tissues over time.
 
 
=== Voltage Domains, Boundaries, and “Prepatterns” ===
 
''Update (a core idea behind “software of life”):''
 
* '''Voltage domains''' can act like territories—regions of tissue with distinct electrical states.
 
* '''Boundaries between domains''' can behave like “anatomical borders,” helping guide where structures form.
 
* '''Prepatterns''' are early electrical layouts that predict later anatomy (a “map before the city is built”).
 
 
=== Bioelectricity as a Control Layer ===
 
''Update (why [[Creatives#Michael Levin |Levin]] calls this software-like):''
 
* Genes specify molecular parts (hardware).
 
* Bioelectric circuits specify higher-level behavior (software).
 
* The same hardware can produce different shapes if the “software state” changes.
 
 
== 3. Target Morphology (The Anatomical Setpoint) ==
 
One of [[Creatives#Michael Levin |Levin's]] central concepts is '''Target Morphology'''. This is the specific 3D shape that a group of cells is trying to build.
 
* '''[[Loop#Feedback Loop - Homeostasis|Homeostasis]] of Shape:''' Just as a thermostat has a setpoint for temperature, biological tissues have a setpoint for shape. If an organism is injured (e.g., a salamander loses a leg), the cells perceive the "error" (difference between current shape and target shape) and proliferate until the target is restored, at which point they stop.
 
* '''Rewriting the Target:''' In famous experiments with Planaria (flatworms), [[Creatives#Michael Levin |Levin's]] lab altered the bioelectric [[Network Pattern|network]] to change the target morphology from "one head" to "two heads." The worms regenerated with two heads. Crucially, when these two-headed worms were cut again, they regenerated as two-headed worms ''forever'', despite having normal, unaltered genomic DNA. The "memory" of the shape had been moved from the genes to the bioelectric circuit.
 
 
''Update (target morphology as an “attractor”):'' You can think of target morphology as a stable “attractor state” in a dynamical system:
 
* Many small perturbations still roll “downhill” into the same final form.
 
* Large perturbations can push the system into a different attractor (a different stable anatomical outcome).
 
* Rewriting bioelectric [[Network Pattern|network]] parameters can change which attractor is “home.”
 
 
''Update (error correction and “knowing when to stop”):''
 
* Growth must stop at the right time; otherwise you get tumors or malformations.
 
* A target-morphology model naturally explains stopping rules: once the error signal drops below a threshold, growth and remodeling taper off.
 
 
''Update (regeneration as a solved geometry problem):'' In this view, regeneration is not merely “cells dividing,” but a coordinated computation:
 
* detect missing structure,
 
* compute what’s missing relative to the target,
 
* allocate cell behaviors (divide, migrate, differentiate),
 
* halt once the target is reached.
 
 
== 4. Agential Materials and TAME ==
 
[[Creatives#Michael Levin |Levin]] proposes a framework called '''TAME''' (Technological Approach to Mind Everywhere), which treats biological systems as "Agential Materials."
 
 
=== The Spectrum of Agency ===
 
Matter is not passive; it exists on a spectrum of manipulability:
 
# '''Passive Matter:''' (e.g., a rock) You must hammer it into shape.
 
# '''Active Matter:''' (e.g., a wind-up toy) It has energy, but no goal.
 
# '''Agential Matter:''' (e.g., a cell or a rat) It has a goal and will try to reach it. If you block one path, it finds another.
 
 
''Update (agency without mysticism):'' “Agency” here does not require human-like consciousness. It means:
 
* the system has a preferred state,
 
* it can sense deviation,
 
* it can act to reduce deviation,
 
* it can do so via multiple strategies (flexibility).
 
 
''Update (why this is scientifically useful):'' Treating tissues as agents encourages better questions:
 
* What is the system’s goal state?
 
* What are its sensors (how does it measure error)?
 
* What actuators does it have (how can it change itself)?
 
* What is its “policy” (how does it choose among options)?
 
 
=== The "Picasso Tadpole" Experiment ===
 
To prove that developing embryos are agential (goal-seeking) rather than hardwired, [[Creatives#Michael Levin |Levin's]] lab scrambled the faces of tadpoles, placing eyes on their tails or backs.
 
* '''The Prediction (Hardwired view):''' The eyes would stay on the back, or the tadpole would be blind because the wiring couldn't reach the brain.
 
* '''The Result (Agential view):''' The craniofacial structures rearranged themselves. The eyes moved across the body to finding their correct positions. Even if they didn't reach the face, the eyes wired into the spinal cord, and the brain exhibited '''plasticity''', learning to see through a tail-eye. The system is modular and intelligent; it solves the problem of "how to see" regardless of the initial arrangement.
 
 
''Update (what this implies about modularity):''
 
* '''Modules can be reassigned:''' Sensory input doesn’t have a single sacred route; the nervous system can learn new mappings.
 
* '''Development is negotiated:''' Tissues coordinate outcomes rather than blindly executing a script.
 
* '''The “goal” can be functional:''' The goal is not “put wire A to socket B,” but “restore visual function,” using whatever wiring is available.
 
 
''Update (a careful reading):'' In popular science retellings, details can blur. The core point worth preserving is the demonstration of:
 
* unexpected anatomical plasticity,
 
* unexpected neural plasticity,
 
* and the usefulness of describing the system as problem-solving toward functional goals.
 
 
== 5. The Cognitive Light Cone ==
 
This concept explains how individual conscious entities combine to form larger ones (addressing the [[Cosmopsychism]] boundary problem).
 
 
* '''Definition:''' The "Cognitive Light Cone" is the spatial and temporal boundary of a system's goals.
 
** '''A single cell''' cares about metabolic concentration (sugar levels) in its immediate vicinity, right now. Its cognitive light cone is tiny.
 
** '''A tissue/organ''' cares about the shape of the whole limb over a period of days or weeks.
 
** '''An organism''' cares about survival over years.
 
* '''Gap Junctions as Erasers:''' When cells connect via gap junctions, they share information so rapidly that the boundary between "me" and "neighbor" dissolves. The individual cell's cognitive light cone expands, merging with others to form a larger collective intelligence capable of pursuing larger goals (like "build a kidney").
 
* '''Cancer as Dissociation:''' [[Creatives#Michael Levin |Levin]] describes cancer not just as a genetic mutation, but as a shrinking of the cognitive light cone. A cancer cell closes its gap junctions, stops listening to the collective [[Network Pattern|network]], and reverts to a single-cell survival mode (grow, divide, consume), treating the rest of the body as environment rather than "self."
 
 
''Update (why “light cone” is a good metaphor):''
 
* It highlights that goals are defined over a ''scope'' (space) and ''planning horizon'' (time).
 
* It suggests a mechanism for “selfhood” boundaries: change coupling, change the effective self.
 
 
''Update (scale-free cognition):'' This connects to [[Creatives#Michael Levin |Levin's]] “scale-free” or “multi-scale” cognition idea:
 
* cognition-like behavior can exist at many biological levels,
 
* and what changes across levels is the size of the goal cone and the sophistication of error correction.
 
 
''Update (cancer through the [[Network Pattern|network]] lens):''
 
* Loss of gap junction communication can isolate cells from tissue-level instructions.
 
* Bioelectric state changes (often depolarization patterns) can correlate with tumor-like behaviors.
 
* A therapeutic angle in this worldview is “re-coupling” the rogue cells to the collective—restoring constraint signals, not only killing cells.
 
 
== 6. Xenobots: Synthetic Living Machines ==
 
[[Creatives#Michael Levin |Levin]], in collaboration with Josh Bongard, created '''Xenobots'''—the world's first living robots.
 
* '''Method:''' Skin cells were scraped from frog embryos and liberated from the "instructional influence" of the rest of the body.
 
* '''Result:''' Left alone, these skin cells did not die or form a flat skin patch. They self-assembled into small, motile blobs that swam, navigated mazes, and even exhibited kinematic replication (gathering loose cells to build "babies").
 
* '''Implication:''' The "default behavior" of frog cells is not to be a frog. "Frog" is just one behavior mode coerced by the collective bioelectric [[Network Pattern|network]]. When liberated, bio-matter exhibits innate creativity and morphogenesis that bio-engineers do not yet understand.
 
 
''Update (why Xenobots matter to morphogenic intelligence):''
 
* '''Cells are competent:''' They can build novel, stable forms not seen in normal development.
 
* '''Form follows constraints:''' Change the constraints (environment, coupling, geometry), and new “solutions” emerge.
 
* '''Top-down vs bottom-up design:''' You can specify a goal (e.g., move this way), but the biological material figures out how to implement it.
 
 
''Update (a governance/ethics note for popular science pages):''
 
* Xenobots are not metal robots; they are living cell collectives.
 
* The most important takeaway is the concept of “programmable” living matter, and the need for careful design goals and safety constraints.
 
 
== 7. Connection to "Mindful Universe" Themes ==
 
 
=== Link to [[Consciousness]] ===
 
[[Creatives#Michael Levin |Levin's]] work bridges the gap between physics and mind. It suggests that cognition is not a magical property of neurons but a fundamental scale-invariant property of organized matter. If a collection of cells can have a "memory" of a shape, the distinction between "body" and "mind" blurs.
 
 
''Update (a clean bridge statement):'' [[Creatives#Michael Levin |Levin]] doesn’t need cells to be conscious to make the philosophical point land:
 
* If “memory” and “problem-solving” exist in non-neural tissue,
 
* then “mind-like” functions are not exclusive to brains,
 
* and consciousness becomes easier to discuss as something that ''builds on'' deeper biological competencies.
 
 
=== Link to [[Astrobiological Pleasure Principle]] ===
 
If evolution is a process of expanding cognitive light cones—getting small systems to cooperate for larger goals—then the "drive" of the universe may be toward higher integration and complexity. The pleasure/reward systems seen in animals are just the biological implementation of this successful cooperation.
 
 
''Update:''
 
* Neurotransmitters associated with reward and mood (e.g., serotonin pathways derived from tryptophan) can be viewed as “coordination chemicals” in advanced animals—helping multi-cellular collectives align behavior toward shared goals.
 
* In that sense, pleasure can be interpreted as a biological “success signal” for integrated cooperation, not merely a human luxury.
 
 
=== Link to [[Quantum Biology]] and [[Orch-OR]] (Careful, Speculative) ===
 
''Update:''
 
* [[Creatives#Michael Levin |Levin's]] work is primarily classical biophysics (ion flows, electrical gradients, [[Network Pattern|network]] coupling), not a quantum theory.
 
* However, it points to a shared theme with [[Quantum Biology]]: life sometimes uses deeper physical layers (electrical, electromagnetic, possibly quantum effects in select contexts) as information channels.
 
* A cautious bridge to [[Orch-OR]] is: both perspectives take the cell’s interior seriously (not just synapses and genes). [[Creatives#Michael Levin |Levin]] emphasizes bioelectric [[Network Pattern|networks]] for anatomical intelligence; Orch-OR emphasizes microtubules for conscious moments. These can be presented as parallel “hidden layers” of biological computation without claiming they are the same mechanism.
 
 
== 8. Practical Implications (Why this is not just philosophy) ==
 
''Update:''
 
* '''Regenerative medicine as “setpoint editing”:''' If tissues have a target morphology, then therapies might work by restoring or rewriting that target, not only by adding stem cells.
 
* '''Birth defects and repair:''' Some defects may be framed as mis-specified pattern memory or broken error-correction loops.
 
* '''Cancer as loss of collective governance:''' Treatments could include restoring communication and constraints (bioelectric “normalization”) alongside genetic and immune approaches.
 
* '''Bioengineering and “living materials”:''' Instead of machining tissues, we may learn to program their goals and let them self-construct.
 
 
== 9. Common Misunderstandings (Quick Clarifiers) ==
 
''Update:''
 
* '''“Cells are intelligent”''' does not mean “cells are conscious like humans.” It means cells can store information, pursue goals, and adapt strategies.
 
* '''“Bioelectric fields”''' does not mean mystical energy. It means measurable voltage patterns and ion flows across membranes and tissues.
 
* '''“Not the genome”''' does not mean “genes don’t matter.” It means genes are necessary but not sufficient to specify high-level geometry by themselves.
 
  
 
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Revision as of 21:33, 1 January 2026

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A major contemporary influence on Scale-Free Agentialism is developmental biologist Michael Levin (Tufts University), whose work is often summarized under the framework TAME (Technological Approach to Mind Everywhere). TAME encourages researchers to study cognition as a set of capabilities that can appear at multiple scales in living systems: cells, tissues, organs, and brains. Scale-Free Agentialism is a research perspective that shifts attention away from purely metaphysical debates about consciousness (for example, Qualia) and toward a scientific, testable question:

How much agency does a system have?

In this view, “mind” is not a binary property that suddenly appears only in large brains. Instead, agency is treated as a continuum that can, in principle, be measured by observing how systems pursue goals, store information, coordinate actions, and correct errors across time.


Core idea: agency as a continuum Scale-Free Agentialism proposes that many familiar “mental” capacities exist in simpler forms throughout biology:

  • Goal-directed behavior (acting to reach or maintain a target state)
  • Memory (persistent internal states that influence future behavior)
  • Problem-solving (finding workable paths to a goal under constraints)
  • Error correction (detecting deviation from a target and compensating)
  • Coordination (distributed parts acting together as a coherent unit)

From this perspective, the key scientific task is to identify and measure these capacities in different systems, rather than assuming cognition begins (or ends) at the skull.

The mystery of Morphogenesis
A central puzzle for TAME is Morphogenesis: how a single fertilized egg reliably builds a complex 3D anatomy (with correct symmetry, organ placement, boundaries, and “stop” signals that end growth at the right time). TAME frames morphogenesis as a kind of distributed control problem:

Developing and regenerating tissues behave like collectives that can sense deviation from a target structure and coordinate multi-step actions to reduce that deviation.

DNA as “hardware”
DNA is essential, but it is not a literal geometric blueprint for the whole organism.

  • DNA primarily provides the parts list (proteins) and many local rules for cell behavior.
  • Genes help specify what cells can do, but do not straightforwardly encode the full, high-level geometry of a finished body.

This distinction is often summarized as:

Genes specify parts and local rules; additional control layers help specify global outcomes.

A useful way to read Levin's contribution is: genes specify parts and local rules, but bioelectric networks help specify global outcomes—where “global” means whole-organism geometry (symmetry, organ placement, boundary conditions, and when to stop growing). This frames development and regeneration as a kind of distributed control system: tissues sense deviation from a target and then coordinate multi-step repair.

Bioelectricity as “software” Michael Levin's work emphasizes that many cells (not only neurons) use Ion channels and other mechanisms to generate and respond to electrical signals. These signals can form networks that coordinate behavior across tissues.

In the TAME framing:

  • Cells form bioelectric networks that influence growth, patterning, and regeneration.
  • These networks can act like a shared information layer that helps tissues coordinate toward a target anatomy.
  • Bioelectric signaling can integrate local cellular events into stable, large-scale outcomes (for example, coherent organ boundaries or correct overall proportions).

This “software” metaphor is meant to highlight that:

  • The same genetic “hardware” can support different anatomical outcomes depending on the information dynamics of cellular networks.
  • Some patterning information may be stored and updated in tissue-level states, not only in DNA.

Bioelectric “pattern memory” (target anatomy) A recurring idea in TAME is that tissues can behave as if they contain a memory of a target structure:

  • Tissues can detect when they are “off-target” (missing parts, incorrect boundaries, wrong polarity).
  • They can recruit coordinated cellular actions (growth, differentiation, remodeling) to move back toward the target.
  • They can stop once the target is achieved (an important feature of healthy development and regeneration).

This supports a practical, engineering-friendly interpretation:

Morphogenesis and Regeneration can be studied as feedback control in living collectives.

Illustrative examples (development and regeneration)

TAME draws attention to experimental and natural phenomena that look like collective problem-solving:

  • Regenerative accuracy: Some organisms regenerate complex structures (for example, correct limb shape) and stop at the right size.
  • Large-scale pattern changes from bioelectric perturbations: In some experimental contexts (notably in Planarian regeneration studies), altering bioelectric signaling has been associated with dramatic anatomical outcomes (such as altered body polarity), suggesting that pattern-level control is not exclusively genetic.

These examples are used to motivate a broader claim:

Anatomy is not only “built” by chemistry; it is also “steered” by information.

A distributed mind - TAME encourages a view of the body as a cognitive system composed of agential materials—living parts that can coordinate and pursue goals at multiple scales.

Scale-free continuum

In a scale-free view, cognition-like properties can be found at many levels:

  • Cells can sense, decide, and act (e.g., migrating, forming boundaries, repairing damage).
  • Tissues can coordinate collective actions (e.g., closing wounds, maintaining structural integrity).
  • Organs can regulate toward stable functional states (e.g., maintaining physiological variables).
  • Brains specialize in high-bandwidth, fast, flexible coordination—especially behavior in complex environments.

The emphasis is not that “a cell thinks like a person,” but that:

Similar organizational principles (information integration, feedback, goal maintenance) can appear across scales.

The brain as a specialist, not the sole source

In this framework, the brain is understood as a powerful specialization of a broader biological capacity:

  • It expands the range of goals and the speed/complexity of coordination.
  • It does not erase the agency present in non-neural tissues, which also regulate, coordinate, and pursue target states.

This framing is intended to be biologically unifying:

The same general idea—distributed, goal-directed regulation—can connect development, healing, physiology, and behavior.

Why this matters TAME and Scale-Free Agentialism are often seen as impactful because they:

  • Provide a testable research program (measure agency rather than argue only in philosophy).
  • Highlight actionable control layers in biology (especially Bioelectricity) relevant to:
    • regenerative medicine
    • birth defect repair (in principle)
    • tissue engineering and synthetic morphology
    • robust self-repairing systems inspired by biology

The “blueprint” problem (and why DNA alone is not enough)

A useful way to sharpen the morphogenesis question is to separate molecular ingredients from organizational information. Standard biology often talks as if the genome “codes for” anatomy, but the genome primarily encodes protein sequences and regulatory elements—not an explicit file that says “five fingers,” “two eyes,” or “bilateral symmetry.”

A common thought experiment makes the paradox intuitive:

  • The “salamander soup” paradox: If you reduce a salamander to a soup of molecules, you still have the same chemical ingredients (and in principle, the same DNA), but you have destroyed the organism’s higher-level organization. The missing piece is not “more molecules,” but the information that coordinates them into a coherent body plan.

In Michael Levin’s framing, the “blueprint” is better described as a dynamic, distributed state maintained in the communication among cells—especially via bioelectric networks—that helps tissues converge on robust anatomical outcomes.

Key clarifier points:

  • Not a picture: The blueprint is not an internal image of the final body, but a set of constraints, goal-states, and control policies that can be reached by more than one route.
  • Not only chemical gradients: Morphogen gradients matter, but Levin emphasizes that stable electrical states and tissue connectivity can store and update pattern information across time.
  • Not fragile: Development and regeneration can be surprisingly robust—tissues can compensate, reroute, and still converge on a correct form.

The bioelectric code (mechanism-level details)

Many (non-neural) cells maintain a steady resting membrane voltage, often written as <math>V_{mem}</math>. In the bioelectric view, these stable voltages are not “background noise”—they can function as state variables that influence gene expression, cell behavior, and tissue-level patterning. Michael Levin refers to this as a kind of bioelectric code—a computational layer that sits between genes and anatomy. <ref>Levin M. “The bioelectric code: An ancient computational medium for dynamic control of growth and form.” (2017) Biosystems. https://pmc.ncbi.nlm.nih.gov/articles/PMC10464596/</ref>

Core components:

  • Ion channels and pumps help establish and modify <math>V_{mem}</math> by controlling which ions enter/leave the cell.
  • Gap junctions couple neighboring cells, allowing ion flow and small signaling molecules to pass, which enables tissues to behave like coordinated networks.
  • Network patterns matter: The important variable is often not one cell’s voltage, but the spatial pattern across a tissue and the way cells are electrically coupled.

This supports a “software-like” interpretation:

  • Genes provide the parts list (hardware).
  • Bioelectric circuits provide a higher-level control layer (software).
  • Changing the tissue’s bioelectric state can change outcomes without changing the DNA.

Measuring and visualizing bioelectric patterns

Bioelectric states are measurable, and multiple complementary tools are commonly used:

  • Voltage-sensitive dyes to visualize tissue-level voltage domains during development.
  • Electrophysiology (e.g., microelectrodes) to directly measure membrane potentials.
  • Genetically encoded voltage indicators (GEVIs) to report voltage changes in living tissues over time.

This measurement toolbox is important because it keeps the concept of “bioelectric pattern memory” anchored to observable, falsifiable signals.

Voltage domains, boundaries, and “prepatterns”

In developing tissues, bioelectric patterns can form voltage domains—regions with distinct electrical states. These domains can behave like “territories,” and the boundaries between domains can function like anatomical borders that help guide where structures form.

A helpful intuition:

  • Prepatterns are early electrical layouts that can predict later anatomy—like a “map” that appears before the “city” is built.
  • Boundaries between domains can help stabilize where different tissues or structures should emerge.

This perspective reinforces the idea that anatomy is not only assembled from parts, but also steered by large-scale informational constraints.

Target morphology as an attractor (and why growth stops)

The concept of target morphology can be usefully described in dynamical-systems language as an attractor state:

  • Many small perturbations still “roll downhill” into the same final form.
  • Larger perturbations can push the system into a different stable outcome.
  • Changing bioelectric network parameters can shift which attractor is “home.”

This framing also makes “knowing when to stop” more intuitive:

  • Unchecked growth leads to tumors or malformations.
  • A target-morphology model provides a natural stopping rule: as the tissue approaches its target, the “error” signal decreases and growth/remodeling taper off.

For planarian regeneration and stable changes in body patterning after brief bioelectric perturbations, see:

“Agential materials” (a simple, non-mystical spectrum)

TAME often motivates clearer scientific questions by treating tissues as agents (in a precise, non-mystical sense). One simple spectrum is:

  • Passive matter (e.g., a rock): must be forced into shape.
  • Active matter (e.g., a wind-up toy): contains energy, but no goal.
  • Agential matter (e.g., a cell, tissue, animal): has preferred states and can act flexibly to reach them.

In this usage, agency does not require human-like consciousness. It means:

  • the system has a preferred state,
  • it can sense deviation,
  • it can act to reduce deviation,
  • it can do so via multiple strategies (flexibility).

This turns vague questions into actionable ones:

  • What is the goal state?
  • What counts as “error,” and how is it sensed?
  • What actuators exist (growth, migration, apoptosis, remodeling, etc.)?
  • What strategies (policies) does the system use under constraints?

Example — “Picasso tadpoles” and anatomical competence

A well-known example used by Michael Levin involves “Picasso tadpoles,” in which craniofacial features begin in abnormal positions. During development and metamorphosis, these animals can still end up with largely normal frog faces, because the organs move along novel paths and stop when they reach correct anatomical relationships. <ref>Levin M. “Technological Approach to Mind Everywhere.” (2022) https://pmc.ncbi.nlm.nih.gov/articles/PMC8988303/</ref>

The conservative takeaway worth emphasizing is:

  • The system’s behavior looks less like a hardcoded script (“move organ X by distance Y”) and more like goal-seeking navigation in morphospace (reach a target configuration from varied starting states).

Note: Popular retellings sometimes blur details; the durable scientific point is the demonstration of developmental plasticity and the usefulness of describing it as problem-solving toward a stable anatomical goal.

The “Cognitive Light Cone” (boundaries of self and collective goals)

Levin uses the metaphor of a cognitive light cone to describe the spatial and temporal scope of a system’s goals—what it can “care about” and regulate over space and time. <ref>Levin M. “The Computational Boundary of a ‘Self’: Developmental Bioelectricity Drives Multicellularity and Scale-Free Cognition.” (2019) https://pmc.ncbi.nlm.nih.gov/articles/PMC6923654/</ref>

Examples (as a conceptual ladder):

  • A single cell regulates nearby conditions over short time horizons.
  • A tissue can regulate geometry (e.g., wound closure or limb pattern) over longer horizons.
  • An organism regulates survival and behavior over years.

Mechanistic bridge to collective intelligence:

  • When cells couple via Gap junctions, information flow can be fast and dense enough that “self vs neighbor” boundaries soften.
  • Strong coupling can expand the effective cognitive light cone, enabling higher-level goals (e.g., “build and maintain a limb”).

Cancer through a network lens (carefully framed):

  • One interpretation emphasizes that reduced coupling and altered bioelectric states can isolate cells from tissue-level constraints, shrinking the scope of collective goals and pushing behavior toward single-cell priorities.
  • This complements (not replaces) genetic and immune perspectives, and motivates research into restoring normal constraint signals as one potential therapeutic angle.

Xenobots and programmable living collectives

Xenobots are small living constructs made from Xenopus (frog) cells, developed by teams including Michael Levin and Josh Bongard. They are notable because they demonstrate that cellular collectives can form novel, stable bodies and behaviors when placed under new constraints. <ref>Kriegman S., Blackiston D., Levin M., Bongard J. “Kinematic self-replication in reconfigurable organisms.” (2021) PNAS 118(49):e2112672118. https://krorgs.github.io/</ref>

Why this matters to morphogenic intelligence:

  • Cells are competent: they can self-organize into functional forms beyond their usual developmental context.
  • Form follows constraints: changing geometry, coupling, and environment yields new solutions.
  • Top-down goals, bottom-up implementation: you can specify a goal (e.g., locomote or aggregate cells) while the living material discovers how to implement it.

Ethics/clarifier note (useful on public-facing pages):

  • Xenobots are not metal robots; they are living cell collectives.
  • The main scientific takeaway is “programmable living matter” and the importance of careful goals and safety constraints.

Practical implications (beyond philosophy)

These ideas are not only conceptual; they suggest actionable directions:

  • Regenerative medicine as setpoint repair: restoring or editing pattern memory (target morphology), not only adding cells.
  • Birth defects and repair: some defects may be framed as broken patterning control loops or mis-specified tissue states.
  • Cancer and governance: complementing genetic/immune approaches with strategies that restore coupling and constraint signals.
  • Living materials and bioengineering: programming tissue goals and letting self-construction do the hard work, rather than “machining” anatomy.

Common misunderstandings (quick clarifiers)

  • “Cells are intelligent” does not mean “cells are conscious like humans.” It means they can store information, pursue goals, and adapt strategies.
  • “Bioelectric fields” does not mean mystical energy. It refers to measurable voltage patterns and ion flows across membranes and tissues.
  • “Not the genome” does not mean “genes don’t matter.” It means genes are necessary but not sufficient to specify high-level geometry by themselves.